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A7 The effect of the mechanism and amount of missingness on phylodynamic inference of heterosexual HIV transmission networks JOURNAL ARTICLE published 1 April 2018 in Virus Evolution |
A43 Molecular epidemiology of hepatitis B virus in South Kivu, an eastern province of the Democratic Republic of Congo JOURNAL ARTICLE published 1 April 2018 in Virus Evolution |
A60 Molecular epidemiology of canine parvovirus type 2 (CPV-2) in Italy JOURNAL ARTICLE published 1 April 2018 in Virus Evolution |
A33 The cervico-vaginale microbiota in chlamydia trachomtais notified women: a case–control study at the sexually transmitted infection outpatient clinic in Amsterdam JOURNAL ARTICLE published March 2017 in Virus Evolution |
A58 Epidemic dynamics of ancient disease outbreaks JOURNAL ARTICLE published 1 August 2019 in Virus Evolution |
Using host genetics to infer the global spread and evolutionary history of HCV subtype 3a JOURNAL ARTICLE published 16 December 2021 in Virus Evolution Research funded by Joint funding of Wellcome Trust and the Royal Society (101237/Z/13/B) | Wellcome Trust (220171/Z/20/Z) | Wellcome Trust (BST00080) | H2020 European Research Council (614725-PATHPHYLODYN) | Medical Research Council (MR/K01532X/1) |
Epidemiological inference from pathogen genomes: A review of phylodynamic models and applications JOURNAL ARTICLE published 29 June 2022 in Virus Evolution Research funded by Australian Research Council (DE190100805) |
Accumulation of copy-back viral genomes during respiratory syncytial virus infection is preceded by diversification of the copy-back viral genome population followed by selection JOURNAL ARTICLE published 18 October 2022 in Virus Evolution Research funded by National Institute of Allergy and Infectious Diseases (AI134862) | National Institute of Allergy and Infectious Diseases (AI137062) |
Three new clades of putative viral RNA-dependent RNA polymerases with rare or unique catalytic triads discovered in libraries of ORFans from powdery mildews and the yeast of oenological interest Starmerella bacillaris JOURNAL ARTICLE published 23 May 2022 in Virus Evolution Research funded by Horizon 2020 Framework Programme (773567) |
Conserved recombination patterns across coronavirus subgenera JOURNAL ARTICLE published 6 July 2022 in Virus Evolution Research funded by ADK (960000000760) | South African National Research Foundation (222574/Z/21/Z) | National Institutes of Health (R01 AI134384 and AI140970) | National Institutes of Health (R01 AI134384 and AI140970) | National Institutes of Health (1U01Al152151-01) |
Tick virome diversity in Hubei Province, China, and the influence of host ecology JOURNAL ARTICLE published 16 December 2021 in Virus Evolution Research funded by Academic Promotion Programme of Shandong First Medical University (2019QL006) | National Science and Technology Major Project (2018ZX10733403) | National Natural Science Foundation of China (31900134) |
Mutations in the coat protein of a begomovirus result in altered transmission by different species of whitefly vectors JOURNAL ARTICLE published 1 January 2020 in Virus Evolution |
Experimental virus evolution in cancer cell monolayers, spheroids, and tissue explants JOURNAL ARTICLE published 20 January 2021 in Virus Evolution Research funded by Ministerio de Ciencia e Innovación to R.S. (BFU2017-84762) |
A5 Peripheral blood cells contribute to HIV-1 viremia induced by romidepsin JOURNAL ARTICLE published March 2017 in Virus Evolution |
Silent codon positions in the A-rich HIV RNA genome that do not easily become A: Restrictions imposed by the RNA sequence and structure JOURNAL ARTICLE published 19 August 2022 in Virus Evolution |
The number of genes encoding repeat domain-containing proteins positively correlates with genome size in amoebal giant viruses JOURNAL ARTICLE published 1 January 2018 in Virus Evolution |
A23 Population level diversification of hepatitis C viral strains over time among people who inject drugs in Baltimore, MD JOURNAL ARTICLE published 1 August 2019 in Virus Evolution |
A11 Phylogenetic and phylogeographic analysis of viral surveillance data to inform rabies control programmes in Cambodia JOURNAL ARTICLE published March 2017 in Virus Evolution |
A26 Transmission patterns and evolution of RSV in a community outbreak identified by genomic analysis JOURNAL ARTICLE published March 2017 in Virus Evolution |
A44 Determination of highly conserved sites by deep sequencing in avian influenza A virus H5N1 JOURNAL ARTICLE published March 2017 in Virus Evolution |